有根Newick分类单元裁剪

操作示例

示例输入

((raccoon,bear),((sea_lion,seal),((monkey,cat),weasel)),dog);

{"secondary":"[\"raccoon\",\"sea_lion\"]","params":{"rooted":true,"mode":"keep","spreadsheetSafe":true}}

示例输出

{"source":{"name":"pasted.txt","bytes":61,"sha256":"012acf1a865f4aaf4df104c3f133fd2d35fcaa2c567e3a4bfa007cdb09a5b2be","encoding":"UTF-8","bomRetained":false},"sourceText":"((raccoon,bear),((sea_lion,seal),((monkey,cat),weasel)),dog);","taxaSource":{"text":"[\"raccoon\",\"sea_lion\"]","bytes":22,"sha256":"86125ef83d644c9874454f8a09481021f4920040bf9cd01c163cab4ad0974a2b"},"summary":{"inputNodes":14,"inputTaxa":8,"keptTaxa":2,"removedTaxa":6,"notFound":0,"requestedTaxa":2,"duplicateRequests":0,"contractions":0,"maxDepth":4,"originalRootRetained":true,"status":"rooted-taxa-pruned"},"requestedTaxa":["raccoon","sea_lion"],"uniqueRequestedTaxa":2,"duplicateRequests":[],"inputNodes":14,"maxDepth":4,"originalRootRetained":true,"rootDirective":"","nodeRecords":[{"index":0,"name":null,"rawName":"","comments":[],"rawLength":null,"children":[1,4,13],"sourceSpan":{"utf8Start":0,"utf8Bytes":60},"lengthSpan":null},{"index":1,"name":null,"rawName":"","comments":[],"rawLength":null,"children":[2,3],"sourceSpan":{"utf8Start":1,"utf8Bytes":14},"lengthSpan":null},{"index":2,"name":"raccoon","rawName":"raccoon","comments":[],"rawLength":null,"children":null,"sourceSpan":{"utf8Start":2,"utf8Bytes":7},"lengthSpan":null},{"index":3,"name":"bear","rawName":"bear","comments":[],"rawLength":null,"children":null,"sourceSpan":{"utf8Start":10,"utf8Bytes":4},"lengthSpan":null},{"index":4,"name":null,"rawName":"","comments":[],"rawLength":null,"children":[5,8],"sourceSpan":{"utf8Start":16,"utf8Bytes":39},"lengthSpan":null},{"index":5,"name":null,"rawName":"","comments":[],"rawLength":null,"children":[6,7],"sourceSpan":{"utf8Start":17,"utf8Bytes":15},"lengthSpan":null},{"index":6,"name":"sea_lion","rawName":"sea_lion","comments":[],"rawLength":null,"children":null,"sourceSpan":{"utf8Start":18,"utf8Bytes":8},"lengthSpan":null},{"index":7,"name":"seal","rawName":"seal","comments":[],"rawLength":null,"children":null,"sourceSpan":{"utf8Start":27,"utf8Bytes":4},"lengthSpan":null},{"index":8,"name":null,"rawName":"","comments":[],"rawLength":null,"children":[9,12],"sourceSpan":{"utf8Start":33,"utf8Bytes":21},"lengthSpan":null},{"index":9,"name":null,"rawName":"","comments":[],"rawLength":null,"children":[10,11],"sourceSpan":{"utf8Start":34,"utf8Bytes":12},"lengthSpan":null},{"index":10,"name":"monkey","rawName":"monkey","comments":[],"rawLength":null,"children":null,"sourceSpan":{"utf8Start":35,"utf8Bytes":6},"lengthSpan":null},{"index":11,"name":"cat","rawName":"cat","comments":[],"rawLength":null,"children":null,"sourceSpan":{"utf8Start":42,"utf8Bytes":3},"lengthSpan":null},{"index":12,"name":"weasel","rawName":"weasel","comments":[],"rawLength":null,"children":null,"sourceSpan":{"utf8Start":47,"utf8Bytes":6},"lengthSpan":null},{"index":13,"name":"dog","rawName":"dog","comments":[],"rawLength":null,"children":null,"sourceSpan":{"utf8Start":56,"utf8Bytes":3},"lengthSpan":null}],"contractionRecords":[],"keptTaxa":["raccoon","sea_lion"],"removedTaxa":["bear","seal","monkey","cat","weasel","dog"],"notFound":[],"mode":"keep","rootPolicy":"original-root-inclusive-declared-paths-not-MRCA","contractions":0,"underscoreMode":"literal-preserve","annotatedUnary":"retained","scope":"User-declared rooted ordinary single Newick. Original root and root edge retained. Unknown edge lengths are not zero; only unlabeled/unannotated non-root unary nodes with both known finite decimals contract by exact arithmetic. No rerooting, unrooted/MRCA subtree, strict minimum nodes or biological inference."}

出现问题时

确认有根profile，修正Newick/JSON语法并明确保留或删除模式，至少保留一个有名叶。用可信流程处理原树重复标签。超限时减少输入、请求或完整收缩报告体量；取消不交付部分树。

常见问题